Seeing the forest for the CRISPR trees

Plant species are threatened by pathogens and pests, and the climate crisis is making things worse. CRISPR could help address some forest health threats, by making trees more resilient. But intervening in a complex ecosystem is a big decision. What are the alternatives? What are the uncertainties? Let’s think about a specific example, the American chestnut, and watch this iBiology video. 

Koonin, CRISPR and the war

Working with Estonian-American scientist Kira Makarova, in 2002 Eugene Koonin identified the genetic region known as CRISPR-Cas. Three years later his group discovered its natural function. He continues to work on microbial defense systems.

“Science in times of war: oppose Russian aggression but support Russian scientists” is the heartfelt article recently published by Eugene Koonin in EMBO Reports. Koonin is a leading evolutionary molecular biologist and a CRISPR pioneer. Born and raised in Moscow, he left the USSR a few weeks before it dissolved in 1991 and moved to the US where he works at the National Center for Biotechnology Information (NCBI-NIH).

He was elected Member of the National Academy of Sciences of the USA in 2016 and Foreign Member of the Russian Academy of Sciences (RAS) in 2019 but resigned from the second one at the end of February this year. You can read why in the excerpt below, and learn more about his outstanding contribution to science and the CRISPR field in this PNAS profile.

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Archealization by CRISPR

Credit Muotri Lab/UC San Diego

Alysson Muotri is a neuroscientist at the University of California, San Diego. His team is developing lentil-size, Neanderthalized mini-brains by using CRISPR + paleogenomics + organoids. After reading the paper published in Science last February, we asked him a few questions about the experiments of paleo-gene-editing he is doing at the Archealization Center.

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150 years after Mendel, say hello to CopyCat Mice

white miceDo you remember the first lab mice equipped with (almost) working CRISPR-based gene drives? The results were pre-printed in bioRxiv last July, but the paper by Kimberly Cooper and colleagues is published in Nature today.  The University of California San Diego has made a video explaining the experiment scheme. And Bruce Conklin, from the University of California San Francisco, comments “on the road to a gene drive in mammals” also in Nature. Below are few excerpts from his News&Views. Continue reading

From chili pepper to hot tomato?

this image shows jalapeño peppers (a cultivated variety of capsicum annuum) credit emmanuel rezende naves

Chili peppers have happily entered our kitchens with their capsaicinoid content, since Cristoforo Colombo brought then back from Central America. Capsicum species however are labour-intensive and difficult to grow. They are also notoriously recalcitrant to biotechnological intervention. Tomatoes are much handier in comparison. The Capsicum and Solanum clades split at least 19 Mya ago but comparative genomics has revealed that tomatoes retain all the necessary genes for pungency. Why not to harness CRISPR power to turn tomatoes into capsaicinoid biofactories then? Continue reading

CRISPR best and worst in 2018

CRISPR contributed to Science’s Breakthrough of the Year and was also nominated for the Breakdown category by the same journal. The second nomination was an easy guess: He Jiankui and its baby-editing claim were also mentioned in Nature’s 10 for 2018. Much more interesting is the decision to celebrate cell-barcoding, the CRISPR-based technique used to track embryo development in stunning detail and over time. Continue reading

How green is CRISPR future? The EU judgment is coming

sunflowers in Spain

Tomorrow, the European Court of Justice is set to pronounce a verdict on the legal status of organisms produced through mutagenesis. In January, the opinion of the Advocate General Michal Bobek was variously interpreted, but scientists are hopeful that the judgment of Case C 528/16 will help the European Commission to reasonably regulate new breeding technologies such as CRISPR. Continue reading